Speaking at the London Film Critics' Circle Awards, where the film won three awards, Boyle said that the wages reported are not true.
"The figures that were released were not true at all," the Telegraph quoted him as saying.
"The actors were paid very well. We have not released any figures - either what they were paid or what they will receive when they complete their education because it would make them vulnerable to certain elements, because they are quite large sums of money," he added.
He said that the production company wanted to make sure that the child actors would benefit from a decent education as well as the money.
"We are very proud of the way we have dealt with everybody, and it's sad that it's been misreported by some people," he added.
Boyle walked away with the gong for British Director of the Year. The film, also won British Film of the Year and Screenwriter of the Year for Simon Beaufoy.
"It's been an extraordinary journey, but in a way I should have expected something extraordinary because the city we made it in does nothing by half," he said.
"Everything's max, there's no half measures, it's a full-on passionate city, so we should have expected it, but you don't.
"It's been incredible," he added.&13;&13;